Table 1 Genome features of F. penangensis ML061-4 compared with Floricoccus spp., Lactococcus spp. and Streptococcus spp.
Feature | F. penangensis ML061-4 | F. penangensis JCM 31735T | F. tropicus JCM 31733T | L. plantarum DSM 20686T | L. lactis DSM 20481T | L. taiwanensis NBRC 109049T | S. salivarius NCTC 8618T | S. hillyeri DSM 107591T | S. ovuberis CCUG 69612T |
|---|---|---|---|---|---|---|---|---|---|
Size (bp) | 2,159,127 | 2,049,722 | 2,157,756 | 1,989,191 | 2,421,471 | 1,956,764 | 2,188,923 | 2,147,614 | 2,467,419 |
ANI valuesa | Not relevant | 97.90 | 93.70 | 69.98 | 69.84 | 69.34 | 70.16 | 69.95 | 68.84 |
G + C content (mol%) | 33.2 | 33.1 | 33.0 | 36.8 | 35.1 | 38.7 | 40.1 | 39.5 | 42.8 |
No. of plasmids | 0 | NA | NA | NA | 0 | NA | 0 | NA | NA |
Genes (total) | 2134 | 2091 | 2243 | 1914 | 2356 | 1908 | 2055 | 2079 | 2353 |
CDSs (total) | 2049 | 2032 | 2179 | 1877 | 2268 | 1846 | 1965 | 2020 | 2304 |
No. of rRNAs | 19 | 5 | 6 | 3 | 19 | 7 | 18 | 4 | 5 |
No. of tRNAs | 63 | 51 | 55 | 30 | 65 | 51 | 68 | 50 | 40 |
No. ncRNAs | 2 | 3 | 3 | 4 | 4 | 4 | 4 | 4 | 4 |
Pseudogene | 16 | 25 | 16 | 44 | 12 | 21 | 58 | 63 | 143 |
Contigs | 1 | 31 | 26 | 43 | 1 | 17 | 1 | 83 | 48 |
Origin | Fresh Assam tea leaf | Flower (Hibiscus rosa-sinensis L.) | Flower (Durio zibethinus L.) | Frozen peas | Water in the drain pit of a kitchen sink | Fresh cummingcordia | Oral cavity | Tracheal (Equus ferus caballus) | Subcutaneous abscess in the udder of a sheep |
Sequencing Technology | PacBio RSII | Illumina MiSeq | Illumina MiSeq | Illumina HiSeq | ABI 3730xl | Illumina NovaSeq | Sanger dideoxy sequencing | Illumina | Illumina NovaSeq |
Assembly level | Complete | Draft | Draft | Draft | Complete | Draft | Complete | Draft | Draft |
Genbank accession number | CP075561 | NZ_MKIQ00000000 | NZ_MKIR00000000 | NZ_JXJX00000000 | NC_020450 | NZ_BNDT00000000 | NZ_CP009913 | NZ_RCVM00000000 | NZ_JAAXPR000000000 |
