Table 3 Gene cluster identification of prophages in F. penangensis ML061-4 genome compared with Floricoccus spp., Lactococcus spp. and Streptococcus spp. using PHASTEST.
Strain | Number of phage found | Location | Length (Kbp) | Completeness | GC (%) | Number of phage gene found | Predicted phage | NCBI reference sequence number |
|---|---|---|---|---|---|---|---|---|
F. penangensis ML061-4 | 1 | 86,797–102,892 | 16.1 | Incomplete | 32.85 | 14 | Streptococcus phage PH15 | NC_010945 |
F. penangensis JCM 31735T | 1 | 936,118–1,318,224 | 48.1 | Intact | 33.11 | 24 | Enterococcus phage phiFL1A | NC_013646 |
F. tropicus JCM 31733T | 2 | 703,783–1,097,746 | 35.7 | Intact | 33.36 | 40 | Lactococcus phage 50101 | NC_031040 |
1,423,859–1,539,006 | 44.3 | Intact | 32.69 | 40 | Bacillus phage BCJA1c | NC_006557 | ||
L. plantarum DSM 20686T | Not detected | - | - | - | - | - | - | - |
L. lactis DSM 20481T | 2 | 1,706,646–1,765,449 | 58.8 | Intact | 35.40 | 53 | Lactococcus phage PLgT-1 | NC_031016 |
1,951,310–1,976,355 | 25.0 | Incomplete | 33.98 | 14 | Lactococcus phage bIL312 | NC_002671 | ||
L. taiwanensis NBRC 109049T | Not detected | - | - | - | - | - | - | - |
S. salivarius NCTC 8618T | 1 | 666,756–715,649 | 48.9 | Intact | 42.02 | 52 | Streptococcus phage 5093 | NC_012753 |
S. hillyeri DSM 107591T | 2 | 1,236,759–1,307,534 | 38.8 | Intact | 40.28 | 47 | Streptococcus phage 20617 | NC_023503 |
1,648,481–1,689,670 | 37.9 | Intact | 39.78 | 44 | Streptococcus phage PH10 | NC_012756 | ||
S. ovuberis CCUG 69612T | Not detected | - | - | - | - | - | - | - |
