Table 1 List of RDRP protein residues participating in intermolecular interactions with phytochemicals.
Complex | H-bond | Hydrophobic | Polar | Salt bridge | π-π/*π-cation | Positive | Negative | Glycine |
---|---|---|---|---|---|---|---|---|
RDRP-echinacoside | Arg731(2), Arg739, Ile799, Ser798, Trp797, Arg794, Tyr768, Cys711 | Tyr609, Leu736, Ile342, Trp805, Pro744, Leu513, Met763, Tyr760, Ile799, Trp797, Tyr768, Leu767, Cys711 | Ser663, His800, Ser798, Thr796, Thr795, Ser712, His713 | Trp797 | Arg731, Arg739, Arg794 | Ash665, Glu735 | Gly801 | |
RDRP-rutin | Ser663, Ile799, Tyr609, Gln605, Arg483 | Ile799, Trp797, Ile475, Tyr477, Met478, Cys711, Tyr609, Val606 | Ser663, His800, Ser798, Thr608, Gln605 | Lys458, Arg473 | Lys458, Arg473, Arg483 | Gly664, Gly604, Gly411 | ||
RDRP-echinacin | Arg473, Arg731, Ser663(2), Cys711 | Met763, Leu513, Tyr609, Ile475, Leu736, Tyr768, Leu767, Trp805, Trp797, Ile799, Cys711 | Thr796, Ser798, His800, Ser712, His713, Ser663 | Arg473, Lys458, Arg731 | Asp666, Ash665 | Gly664, Gly801 | ||
RDRP-cynaroside | Ser798, Ile799, Ser663(2), Ash665, Tyr668(2) | Trp797, Ile799, Tyr609, Met763, Tyr760, Cys711, Leu513, Leu767, Tyr768, Leu736 | Thr795, Thr796, Ser798, His800, Ser663, His713 | Arg731 | Arg731, Arg739 | Ash665, Asp666 | Gly664 | |
RDRP-G8O-G8L | Trp797, Arg731 | Ile342, Trp797, Met763, Tyr760, Leu736, Tyr768, Leu767, Trp805, Leu513, Leu516, Cys711 | His800, Ser798, Thr796, Thr795, His713, Ser712 | Arg731 | Arg739 | Glu735 | Gly801 |