Table 1 The Lactuca sativa predicted miRNAs are characterized in terms of source miRNAs, Precursor length (PL), Minimum free energy (MFE), Mature sequence (MS), Mature sequence arm (MSA), Mature sequence length (MSL), Number of mismatches (NM), Source EST/Nucleotide (SE/SNT), Data Base (DB).
Reference miRNAs (above) and their conserved orthologue | PL | MFE(kcal/mol) Reference (above) and orthologue (below) | MS with their positions Reference (above) and orthologue (below) | MSA | MSL | NM | SEST/SNT | Strand | DB |
|---|---|---|---|---|---|---|---|---|---|
han-MIR160a lsa-MIR160 | 88 86 | -47.50 -49.80 | 4-UGCUCGGCUCCCUGUAUGCCA-24 4-UGCCUGGCUCCCUGUAUGCCA-24 | 5’ | 21 | 2 | XR_002858025.2 |  +  | NT |
aly-MIR165a lsa-MIR165 cluster | 148 167 | -57.10 -64.00 | 32-GAAUGUUGUCUGGAUCGAGG-51 3-GAAUGUUGUCUGGCUCGAGG-22 | 5’ | 20 | 1 | XR_006184421.1 |  +  | NT |
106-UCGGACCAGGCUUCAUCCCC-125 148-UCGGACCAGGCUUCAUUCCC-167 | 3’ | 20 | 1 | ||||||
hpa-MIR166a lsa-MIR166 | 152 211 | -54.60 -73.30 | 127-UCGGACCAGGCUUCAUUCCCC-147 186-UCGGACCAGGCUUCAUUCCCC-206 | 3’ | 21 | 0 | XR_002859386.2 |  +  | NT |
cca-MIR167 lsa-MIR167 | 218 195 | -66.50 -55.70 | 6-UGAAGCUGCCAGCAUGAUCUGG-27 1-UGAAGCUGCCAGCAUGAUCUGG-22 | 5’ | 22 | 0 | XM_023905497.2 |  +  | NT |
aly-MIR168a lsa-MIR168 cluster | 155 126 | -70.90 -51.20 | 24-UCGCUUGGUGCAGGUCGGGAA-44 3-UCGCUUGGUACAGGUCGGGAA-23 | 5’ | 21 | 1 | XR_006184394.1 |  +  | NT |
109-CCCGCCUUGCAUCAACUGAAU-129 106-CCCGCCUUGUAUCAACUGAAU-126 | 3’ | 21 | 1 | ||||||
seu-MIR319 lsa-MIR319 | 129 83 | -42.20 -28.20 | 89-CGUGAAUGAUGCGGGAGAUAG-109 63-UGUGAAUGAUGCGGGAGACAA-83 | 3’ | 21 | 3 | XR_006185748.1 |  +  | NT |
cca-MIR394 lsa-MIR394 | 211 190 | -72.30 -54.50 | 9-UUGGCAUUCUGUCCACCUCC-28 1-UUGGCAUUCUGUCCACCUCC-20 | 5’ | 20 | 0 | XR_002860145.2 |  +  | NT |
har-MIR403a lsa-MIR403 | 154 108 | -49.90 -36.90 | 121-UUAGAUUCACGCACAAACUCG-141 88-UUAGAUUCACGCACAAACUCG-108 | 3’ | 21 | 0 | XR_006186778.1 |  + /- | NT |
aly-MIR408 lsa-MIR408 | 211 86 | -59.40 -38.20 | 117-AUGCACUGCCUCUUCCCUGGC-137 66-GUGCACUGCCUCUUCCCUGGC-86 | 3’ | 21 | 1 | XR_006183170.1 |  +  | NT |
aly-MIR862 lsa-MIR862 | 366 46 | -179.60 -8.90 | 210-ACAUGCUGGAUCUACUUGAAG-230 22-ACAUGUUGGAUUUGCUUGAAG-42 | 3’ | 21 | 2 | XM_023905720.2 |  +  | NT |
ptc-MIR1446a lsa-MIR1446 | 105 103 | -57.80 -38.30 | 9-UUCUGAACUCUCUCCCUCAA-28 9-UUCUGAACUCUCUCCCUCAA-28 | 5’ | 20 | 0 | XM_042901179.1 |  +  | NT |
aau-MIR2086 lsa-MIR2086 | 87 79 | -23.40 -24.30 | 63-GACAUGAAUGCAGAACUGGAA-83 59-GACAUGAAUGCCGAACUUGAA-79 | 3’ | 21 | 2 | XM_023898846.2 |  + /- | NT |
pgi-MIR2118 lsa-MIR2118 | 160 65 | -62.10 -34.10 | 98-UUUCCUAUUCCACCCAUCCCAU-119 44-UUUCCAAUUCCACCCAUGCCGC-65 | 3’ | 22 | 4 | XR_002857217.2 |  +  | NT |
han-MIR3630 lsa-MIR3630 cluster | 102 85 | -21.70 -21.90 | 13-GCAAGUGAUGAUAGACCAGACA-34 04-GCAAGUGAUGAUAGAUCAGACA-25 | 5’ | 22 | 1 | XR_002858676.1 |  +  | NT |
72-UGUGGGAAUCUCUCUGAUGCUU-93 63-UGUGGGAAUCUCUCUGAUGCUU-84 | 3’ | 22 | 0 | ||||||
gma-MIR4413a lsa-MIR4413 | 87 72 | -38.80 -17.00 | 9-AAGAGAAUUGUAAGUCACUG-28 1-AAGCGAACUGUAAGUCACUA-20 | 5’ | 21 | 3 | XM_023894249.2 |  + /- | NT |
osa-MIR5523 lsa-MIR5523 | 84 64 | -16.90 -11.30 | 53-UGAGGAGGAACAUAUUUACUAG-73 43-UGAGGAGGAACAUAUUUACUAG-64 | 3’ | 22 | 0 | XM_052768008.1 |  +  | NT |
gma-MIR5368 lsa-MIR5368 | 169 166 | -68.70 -64.20 | 149-GGACAGUCUCAGGUAGACA-167 148-GGACAGUCUCAGGUAGACA-166 | 3’ | 19 | 0 | NC_061693.1 |  +  | NT |
osa-MIR5538 lsa-MIR5538 | 123 94 | -42.90 -14.18 | 11-ACUGAACUCAAUCACUUGCUGC-32 1-ACUGAACUCAAUCACUUGCUGC-22 | 5’ | 22 | 0 | XM_052764217.1 |  +  | NT |
cca-MIR6111 lsa-MIR6111 | 267 55 | -147.60 -19.50 | 8-UCUUUAUGUCACGAUGUAUGAC-29 2-UCUUUAUAUCGCGAUGCAGGAC-23 | 5’ | 22 | 4 | DY959874.1 |  + /- | EST |
cca-MIR6113 lsa-MIR6113 | 81 85 | -36.20 -30.00 | 7-UCUGAAACUCAAGAACACGUUG-28 1-UCUGAAACUCAAGAACAUGUCG-22 | 5’ | 22 | 2 | XM_023875132.2 |  +  | NT |
hbr-MIR6167 lsa-MIR6167 | 140 55 | -100.90 -16.60 | 102-UACCCAGGUGGAAGCUUUGA-121 36-UACCCUGGUGGAAGCUUCGA-55 | 3’ | 20 | 2 | DY978399.1 |  +  | EST |
osa-MIR6255 lsa-MIR6255 | 85 64 | -26.70 -21.70 | 11-UGGGAAAAAUGGGCAGUUGAGU-32 1-UGGGAAAGGUGGGCAGUUGUGC-22 | 5’ | 22 | 4 | XR_002855722.1 |  +  | NT |
hbr-MIR6482 lsa-MIR6482 | 130 88 | -52.90 -20.80 | 21-CAGGAACUGGUAUCAACCCAGC-42 01-CUGGAACUGGUAUCAACCCUGC-22 | 5’ | 22 | 2 | XM_023916423.2 |  +  | NT |
hbr-MIR6485 lsa-MIR6485 | 90 59 | -18.40 -11.30 | 4-UAGGAUGUAGAAGAGCAUAA-23 1-UAGGAUGUAGAAGAUCAUAA-20 | 5’ | 20 | 1 | NC_061693.1 |  + /- | NT |
gma-MIR10194 lsa-MIR10194 | 180 170 | -99.90 -35.20 | 11-UGUUGAAGGUGUGUAUGACAAG-32 01-AGUUGAAGGUGUGGAUGAAAAG-23 | 5’ | 22 | 3 | XM_023899651.2 |  +  | NT |
pla-MIR11602 lsa-MIR11602 | 115 115 | -22.10 -22.20 | 84-UCUAACGGAACGCUAUUGGAUC-105 84-UCUAACGGAACACUAUUGGAUC-105 | 3’ | 22 | 1 | XM_042897189.1 |  +  | NT |
pla-MIR11604 lsa-MIR11604 | 79 66 | -24.30 -18.60 | 49-UCCAGAGGGAGAACGUGGCGA-69 46-UCCAGAGAGAGAACGUGGCGA-66 | 3’ | 21 | 1 | CV700380.1 |  +  | EST |
