Table 1 Genes associated with top hypermethylated DMRs in the rumen of Treated vs. Control dairy buffaloes.
DMR | Methylation status | Mean differential methylation | Gene Name | Biotype | ||
|---|---|---|---|---|---|---|
Chromosome | Start | End | ||||
22 | 17,879,158 | 17,879,365 | hyper | 0.665006828 | LOC112581458 | lncRNA |
22 | 17,879,158 | 17,879,365 | hyper | 0.665006828 | SETBP1 | protein_coding |
13 | 55,313,723 | 55,313,759 | hyper | 0.567538424 | MICU2 | protein_coding |
22 | 31,854,596 | 31,854,911 | hyper | 0.536708638 | KCTD1 | protein_coding |
14 | 21,565,877 | 21,565,972 | hyper | 0.53380143 | NOL4L | protein_coding |
15 | 82,043,403 | 82,043,480 | hyper | 0.484622869 | LOC102411003 | protein_coding |
15 | 82,043,403 | 82,043,480 | hyper | 0.484622869 | LOC102411327 | protein_coding |
15 | 82,043,403 | 82,043,480 | hyper | 0.484622869 | LOC102411003 | protein_coding |
15 | 82,043,403 | 82,043,480 | hyper | 0.484622869 | LOC102411327 | protein_coding |
14 | 23,183,832 | 23,184,003 | hyper | 0.441427238 | SCRT2 | protein_coding |
20 | 29,096,514 | 29,096,684 | hyper | 0.406636144 | PRKD1 | protein_coding |
21 | 59,640,040 | 59,640,113 | hyper | 0.393045958 | RUVBL1 | protein_coding |
21 | 59,640,040 | 59,640,113 | hyper | 0.393045958 | SEC61A1 | protein_coding |
3 | 113,772,948 | 113,772,991 | hyper | 0.359098821 | TRPM6 | protein_coding |
3 | 113,772,948 | 113,772,991 | hyper | 0.359098821 | LOC112584136 | other |
3 | 113,772,948 | 113,772,991 | hyper | 0.359098821 | LOC112584135 | pseudogene |
15 | 20,230,662 | 20,230,752 | hyper | 0.350463974 | UBR5 | protein_coding |
7 | 4,353,005 | 4,353,095 | hyper | 0.342781359 | TBC1D14 | protein_coding |
13 | 35,372,800 | 35,372,843 | hyper | 0.336628127 | LOC102409495 | protein_coding |
13 | 35,372,800 | 35,372,843 | hyper | 0.336628127 | SPRY2 | protein_coding |
17 | 7,984,154 | 7,984,244 | hyper | 0.334639296 | SGSM1 | protein_coding |
17 | 7,984,154 | 7,984,244 | hyper | 0.334639296 | LOC112579908 | lncRNA |
9 | 30,169,469 | 30,169,527 | hyper | 0.33294785 | ZFYVE16 | protein_coding |
5 | 8,956,849 | 8,956,938 | hyper | 0.332614676 | TRAF5 | protein_coding |
20 | 28,061,802 | 28,062,041 | hyper | 0.331348983 | COCH | protein_coding |
4 | 127,392,384 | 127,392,479 | hyper | 0.322642114 | TOMM20 | protein_coding |
