Table 3 Website for bioinformatics analysis.

From: Structural analysis and core promoter prediction of STAR gene and its regulatory mechanism of progesterone synthesis in bovine luteal cells

Softwarename

Website

Purpose

BDGP

https://fruitfly.org/seq_tools/promoter.html

Promoter prediction

MEGA

MEGA-X software NJ method to construct phylogenetic tree

Construct evolutionary tree

Gene Cards

https://www.genecards.org/

Subcellular localization

ExPASy

https://web.expasy.org/protparam/

Physical and chemical property analysis

TMHMM-2.0

https://services.healthtech.dtu.dk/services/TMHMM-2.0/

Transmembrane domain prediction

SignalP-6.0

https://services.healthtech.dtu.dk/services/SignalP-6.0/

Signal peptide prediction

NetSurfP-2.0

https://services.healthtech.dtu.dk/services/NetSurfP-2.0/

Protein secondary structure prediction

SWISS-MODEL

https://swissmodel.expasy.org/interactive

Protein tertiary structure prediction

STRING

https://string-db.org/

Protein Interaction

AliBaba2.1

http://generegulation.com/pub/programs/alibaba2/index.html

Transcription factor binding site prediction

MethPrimer

http://www.urogene.org/methprimer2/

CPG island prediction

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