Table 1 Parameter values for main analysis with phybreak and sensitivity analysis with TransPhylo.
Phybreak | TransPhylo | ||
|---|---|---|---|
Generation time interval | \(\Gamma (2.77, 0.47)\) | ||
Sampling time interval | \(\Gamma (1.45, 0.55)\) | ||
Substitution rate | 0.355 SNPs/genome/year (Lineage 3) 0.3 SNPs/genome/year (Lineage 4) | NA | |
Sampling probability | NA | 0.95 | |
Effective population size | NA | 1.48 | |
Offspring distribution | NA | 1 | |
