Table 1 Mapping results of Nanopore long reads to the four possible configurations associated with three DBS (DBS01–03) of the S. splendens mitogenome, which correspond to repetitive sequences (R01, R04, and R07).

From: Unveiling the mitochondrial genome of Salvia splendens insights into the evolutionary traits within the genus Salvia

Repetitive sequences ID

DBS ID

Query sequence

Subject sequence

Alignment length

Repeat copy 1

Repeat copy 2

Numbers of long reads mapped to each DBS

Recombination frequency (%)

Start

End

Strand

Start

End

Strand

c1

c2

c3

c4

R01

DBS01

MC1

MC2

13331

67353

80683

plus

91656

104986

plus

17

15

16

6

40.74

R04

DBS02

MC1

MC2

192

86255

86446

plus

155991

155800

minus

48

42

1

3

4.26

R07

DBS03

MC1

MC2

123

170622

170744

plus

1118

1239

plus

90

76

1

0

0.60

  1. The percentage of minor DBS configurations was calculated as the number of reads mapped to the configurations having fewer mapped reads divided by those mapped to all configurations.
  2. DBS double-bifurcation structure, MC1/2 mitogenome chromosome 1/2.
  3. aValidated successfully with PCR.
  4. ball positions are based on MC1, except those marked with MC2.
Back to article page