Table 2 Evaluation of GPT-3.5-turbo with various prompts on GPCards.

From: The application of Large Language Models to the phenotype-based prioritization of causative genes in rare disease patients

Hits (\(\%\))

Q1

Q2

Q2−sign

Q2−pheno

Q2-full gene names

Q3

Q2\(+\)Q3

Q4

Hits@1

74

76

76

76

30

62

80

80

Hits@5

92

94

94

94

64

78

98

98

Hits@10

92

94

94

94

100

82

100

100

  1. The numbers indicate the percentage of the causative gene hits at ranks 1, 5, and 10. The notation Q2\(+\)Q3 denotes the utilization of Q3 when Q2 fails. The symbol Q2−sign indicates substituting “symptoms” with “signs and symptoms”, whereas Q2−pheno represents replacing “symptoms” with “phenotypes” in Q2. Q2-full gene names represent using full gene names instead of their symbols in Q2.
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