Table 4 QTL-Specific indel primers based on parental polymorphisms.
From: QTL mapping for yield contributing traits in mungbean (Vigna radiata L.) using a RIL population
S. No. | QTLs | InDel (Chr: Pos) | Fwd primer (5’-3’) | Rev primer (5’-3’) | InDel size (bp) | PMR allele (bp) | PB allele (bp) | Positive allele |
|---|---|---|---|---|---|---|---|---|
1 | qNL-7-1 | 7:37041979 | TGA AAC ATA ACC TCG AAC TTG GG | GGA ACA TGC TGT CAA AAT TGT CC | 43 | 202 | 159 | PMR-1 |
2 | qNL-7-2 | 7:50977094 | TCG TGT TTT GGC TTG AGT CA | GTC CAA ATT GCA TGA AAC CCT | 23 | 211 | 188 | PB |
3 | qNL-9-1 | 9:2418496 | TGT GGT GTT TCG TTG ATT GCT | CAC CAC ATC TCA GCC ATC TAT | 36 | 168 | 132 | PMR-1 |
4 | qNL-11-1 | 11:1900100 | AAA CCG AGT TGA AGC CAC TG | TCG ACT TCC TTG ACT TTG TAG C | 22 | 193 | 171 | PB |
5 | qPH-11-1 | 11:9924797 | CAC AAA TCT CGT ACT GTC ACC A | TGC TGG TTC AAT TCA GGG TT | 29 | 259 | 230 | PMR-1 |
6 | qPH-2-1 | 2:6932218 | ACT TGA CAC TTC CAC TAA TCT GT | TAT TCC CTT CCC TCA CTGGC | 18 | 141 | 159 | PB |
7 | qPH-7-1 | 7:31724313 | AAC ATT ACG GCT AAT TCC CCT | TGG ATT ATG CAG AGT GGG AGA | 17 | 155 | 172 | PMR-1 |
8 | qSPAD25-5-1 | 5:27949502 | TGG CGG TAC ATA ACT TCA ATG G | TGC TTC TAC TTG TTC TAC CAG TG | 23 | 153 | 176 | PMR-1 |
9 | qSPAD25-7-1 | 7:2576868 | GGA GCA AAA GAT ACA GAC TGT CA | CTT GTG AAT GTT CTA GCT CTG C | 25 | 136 | 161 | PMR-1 |
10 | qSPAD45-7-1 | 7:2576868 | GGA GCA AAA GAT ACA GAC TGT CA | CTT GTG AAT GTT CTA GCT CTG C | 25 | 136 | 161 | PMR-1 |
11 | qSW-6-1 | 6:33016439 | TCA ATC ACC CAT ATG ACA CAT GA | GGG TGA AAG ACA AGA TCG CA | 16 | 238 | 222 | PMR-1 |
12 | qSW-10-1 | 10:20141601 | AGA CGG AAA GGA ATG GGG TT | CAA ACA ATC TTA CCG TCA CTT GA | 18 | 175 | 157 | PB |
13 | qSW-11-1 | 11:270254 | GCG GGT ATT GTA TCT CGT GC | GCA ACC ACG CAT TTC ATA AGC | 18 | 204 | 222 | PMR-1 |
14 | qNP-2-1 | 2:21533754 | TTC CAC CTT CCT GAT GAG CA | TCC TAT CCC ATT TGG CAC CT | 18 | 196 | 178 | PB |
15 | qNP-4-1 | 4:4797827 | CTC TCC AAA CAC TGC CAC AC | TTG CTT GGT TTT CTT TTG CTT TT | 32 | 213 | 181 | PB |
16 | qGY-3-1 | 3:9733061 | TGG TGA GGA CAG TGC ATT GA | TGG ACA ACA TGA ACG CTT TG | 24 | 135 | 159 | PB |
17 | qGY-4-1 | 4:4797827 | CTC TCC AAA CAC TGC CAC AC | TTG CTT GGT TTT CTT TTG CTT TT | 32 | 213 | 181 | PB |
18 | qGY-7-1 | 7:52111639 | AGT ACA ACT AAG CCC TGC CC | GAC TGT TGG CTT GGA CGA TT | 22 | 171 | 193 | PB |
