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Water line biofilm regrowth dynamics in six wean-to-finish farms post peracetic acid water line cleaning and disinfection
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  • Published: 19 February 2026

Water line biofilm regrowth dynamics in six wean-to-finish farms post peracetic acid water line cleaning and disinfection

  • Gabrielle E. Doughan  ORCID: orcid.org/0009-0007-1197-47581,
  • Becca K. Walthart1,
  • Meredith B. Petersen1,
  • Cora E. Schau1,
  • Kristin J. Skoland1,
  • Nubia R. Macedo2,
  • Justin T. Brown1,
  • Jessica L. Bonnema1,
  • Danyang Zhang3 &
  • …
  • Locke A. Karriker1 

Scientific Reports , Article number:  (2026) Cite this article

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We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Environmental sciences
  • Microbiology
  • Water resources

Abstract

Water quality and water line management play a critical role in swine health; however, they are often overlooked aspects of swine production. Best practices for water line cleaning and disinfection in pig barns are limited, and a one-time (terminal) water line cleaning with peracetic acid (PAA) may reduce mineral scale and biofilm presence. The objective of this study was to evaluate swine water line biofilm regrowth dynamics in six commercial wean-to-finish farms on well water following application of 0.78% PAA. Water line samples were collected aseptically pre-treatment (0), after water lines had been flushed 24 h after PAA had been applied (1), and 3, 5, 7, 14, 21, 42, 56, and 77 days post-treatment. Biofilm was quantified via aerobic and anaerobic standard plate counts. Results demonstrate a significant reduction in biofilm quantities pre- (0) and post-treatment (1), with over a three-log reduction in log 10 colony forming units (CFU) per mL (adjusted p-value = 0.0000). Biofilms regrew within three days and were not significantly different than pre-treatment (0) biofilm quantities. This demonstrates that administration of 0.78% PAA is effective at reducing biofilm quantities, however, long-term impacts are limited. Following labeled dosages and continuous water disinfectants should be considered for long term management.

Data availability

The dataset generated during this study is available in the Iowa State University Open Data repository “DataShare” at the following link: https://doi.org/10.25380/iastate.29175365.v1.

Abbreviations

PAA:

Peracetic acid

CFU/ mL:

Colony forming units per mL

PVC:

Polyvinyl chloride

WDS:

Water distribution system

EPS:

Extracellular polymeric substance

TOO:

Total oxidizing oxygen

SPC:

Standard plate count

ASPC:

Aerobic standard plate count

ANSPC:

Anaerobic standard plate count

ISU VDL:

Iowa State University Veterinary Diagnostic Laboratory

VBNC:

Viable but non-culturable

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Acknowledgements

The authors are grateful for Grace Clark, Grace Nightser, and Rylee Hundley for their tremendous help with sample collection and processing, and Chantz Nittler for his work in creating the illustrations. The authors want to thank the veterinarians and producers involved in the study for facilitating access to their farms.

Funding

This research was supported by funds from CID LINES, an Ecolab Company.

Author information

Authors and Affiliations

  1. Swine Medicine Education Center, Iowa State University College of Veterinary Medicine, Ames, IA, USA

    Gabrielle E. Doughan, Becca K. Walthart, Meredith B. Petersen, Cora E. Schau, Kristin J. Skoland, Justin T. Brown, Jessica L. Bonnema & Locke A. Karriker

  2. Veterinary Diagnostic Laboratory, Iowa State University College of Veterinary Medicine, Ames, IA, USA

    Nubia R. Macedo

  3. Department of Statistics, Iowa State University, Ames, IA, USA

    Danyang Zhang

Authors
  1. Gabrielle E. Doughan
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Contributions

GD and LK contributed equally to the study design, project execution, data analysis and manuscript preparation. BK, MP, KS, JTB contributed equally to this work through study design review, project execution, and manuscript review. NM contributed to the study design and directed sample processing at the Clinical Microbiology laboratory and aided in preparation of the manuscript. CS contributed significantly to sample collection, sample processing, and editing of the manuscript. JLB contributed to study design and contributed to the preparation of the manuscript. DZ performed statistical analysis. All authors have read, revised, and approved the final version of the manuscript.

Corresponding author

Correspondence to Gabrielle E. Doughan.

Ethics declarations

Competing interests

Dr. Gabrielle Doughan’s salary was partially supported by funds from CID LINES, an Ecolab Company. The funding source had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. All other authors declare that they have no competing interests.

Ethics approval and consent to participate

Oral consent to perform the project was obtained from veterinarians representing farm 1–6’s owners to perform the project. No procedures on swine were performed and the study was IACUC exempt.

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Supplementary Information

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Supplementary Material 1

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Doughan, G.E., Walthart, B.K., Petersen, M.B. et al. Water line biofilm regrowth dynamics in six wean-to-finish farms post peracetic acid water line cleaning and disinfection. Sci Rep (2026). https://doi.org/10.1038/s41598-026-40725-x

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  • Received: 20 November 2025

  • Accepted: 16 February 2026

  • Published: 19 February 2026

  • DOI: https://doi.org/10.1038/s41598-026-40725-x

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Keywords

  • Biofilm
  • Standard plate counts
  • Water lines
  • Peracetic acid
  • Water quality
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