Table 1 E. crypticus genome properties
From: Annelid genomes: Enchytraeus crypticus, a soil model for the innate (and primed) immune system
De novo assembly | |
Number of scaffolds | 910 |
Total genome size (bp) | 525,192,231 |
Largest scaffold (bp) | 5,688,427 |
Smallest scaffold (bp) | 1,352 |
N50 (bp) | 1,254,661 |
L50 | 118 |
GC (%) | 35.41 |
Percent Illumina reads mapping to the genome | 97.7 |
Percent PacBio reads mapping on the genome | 80.6 |
Average coverage depth | 350 |
Mitochondrial genome size (bp) | 15,205 |
Genome structure | |
Total number of genes | 18,452 |
Genes as genome fraction (%) | 24.78 |
Average gene length (bp) | 7,054 |
Number of protein-coding genes | 16,424 |
Protein-coding genes as genome fraction (%) | 24.70 |
Exons as genome fraction (%) | 5.04 |
Introns as genome fraction (%) | 19.68 |
Repeats as genome fraction (%) | 39.03 |
Functional annotation | |
Number of genes with putative functions | 13,010 |
Number of genes with Gene Ontology terms | 7,540 |
Number of genes with InterPro domain information | 11,468 |
Validation | |
Complete BUSCOs (%) | 94.00 |
Detected BUSCOs (complete + partial) (%) | 95.50 |
