Table 6 Summary of the feature selection and prediction methods used, if (*) method is used for classification, (**) used for survival, otherwise method is used for both classification and survival.
Acronym | Feature selection methods | Acronym | Prediction methods |
|---|---|---|---|
VAR* | Variance | GNB* | Gaussian naïve baye |
RELF* | Relief | MNB* | MultinomiIive bayes |
MI* | Mutual information | BNB* | Bernoulli naïve bayes |
mRMR* | Minimum redundancy maximum relevance ensemble | KNN* | K-nearest neighbourhood |
ETE* | Extra tree ensemble | RF* | Random forest |
GBDT* | Gradient boosting decision tree | BAG* | Bagging |
TSQ* | T-test score | DT* | Decision tree |
CHSQ* | Chi-square score | GBDT* | Gradient boosting decision tree |
EN* | Elastic net | Adaboost* | Adaptive boosting |
LASSO* | Least absolute shrinkage and selection operator | XGB* | Xgboost |
WLCX* | Wilcoxon | LDA* | Linear discriminant analysis |
L1-SVM* | L1- based linear support vector machine | LGR* | Logistic regression |
L1-LGR* | L1 -based logistic regression | Linear-SVM* | Linear support vector machine |
JMIM** | Joint mutual information maximisation | RBF-SVM* | Radial basis function support vector machine |
RFVH** | Random forest with variable hunting | MLPC* | Multi-layer perceptron |
RFVH -IMP** | Random forest with variable hunting and Gini impurity corrected variable importance | BGLM_CoxPH** | Boosting gradient linear models |
RF* | Random forest variable hunting with maximal depth | BGLM_Cindex** | Boosting gradient linear models |
Spearman** | Spearman correlation | BGLM_Weibull** | Boosting gradient linear models |
Person** | Pearson correlation | BT_CoxPH** | Boosting trees |
Kendall** | Kendall rank correlation | BT_Weibull** | Boosting trees |
Random** | Random (null hypothesis) | Cox_Lasso** | Cox lasso |
Cox_Net** | Cox net | ||
Cox** | Cox proportional hazard | ||
RSF** | Random survival forest | ||
MSR_RF** | Random forest using maximally selected rank statistics | ||
ET_RF** | Random forest with extra trees |