Table 1 Overall results with statistical analysis on the TCGA testing sets in (a) classification of aggressive and non-aggressive EC, (b) TMB prediction of the aggressive EC, and (c) TMB prediction of the non-aggressive EC
Task | Method | Acc. | Sens. | Spec. | MeanSS | AUROC (μ ± σ) | Fisher’s test p-value |
---|---|---|---|---|---|---|---|
(a) Classification of aggressive and non-aggressive EC | TR-MAMIL | 0.89 | 0.93 | 0.84 | 0.89 | 0.88 ± 0.05 | <0.001*** |
ClassicMIL31 | 0.53 | 0.53 | 0.53 | 0.53 | 0.71 ± 0.18 | 0.179 | |
CLAM26 | 0.83 | 0.89 | 0.74 | 0.81 | 0.85 ± 0.04 | <0.001*** | |
Wang et al.32 | 0.73 | 0.74 | 0.72 | 0.73 | 0.80 ± 0.05 | <0.001*** | |
Improved_InceptionV3_MS33 | 0.69 | 0.90 | 0.40 | 0.65 | 0.80 ± 0.00 | <0.001*** | |
TOAD27 | 0.80 | 0.76 | 0.86 | 0.81 | 0.81 ± 0.05 | <0.001*** | |
TransMIL28 | 0.83 | 0.76 | 0.91 | 0.84 | 0.88 ± 0.05 | <0.001*** | |
MRAN29 | 0.86 | 0.90 | 0.81 | 0.86 | 0.88 ± 0.05 | <0.001*** | |
(b) TMB prediction for the aggressive subtype | TR-MAMIL | 0.73 | 0.72 | 0.73 | 0.73 | 0.82 ± 0.13 | <0.001*** |
ClassicMIL31 | 0.61 | 0.53 | 0.65 | 0.59 | 0.62 ± 0.08 | 0.127 | |
CLAM26 | 0.66 | 0.67 | 0.66 | 0.66 | 0.67 ± 0.03 | 0.002** | |
Wang et al.32 | 0.74 | 0.71 | 0.76 | 0.73 | 0.73 ± 0.02 | 0.436 | |
Improved_InceptionV3_MS33 | 0.70 | 0.41 | 0.86 | 0.64 | 0.65 ± 0.05 | 0.017* | |
TOAD27 | 0.64 | 0.39 | 0.80 | 0.60 | 0.6 ± 0.05 | 0.038* | |
TransMIL28 | 0.62 | 0.78 | 0.52 | 0.65 | 0.6 ± 0.03 | 0.189 | |
MRAN29 | 0.72 | 0.58 | 0.81 | 0.70 | 0.73 ± 0.02 | <0.001*** | |
(c) TMB prediction for the non-aggressive subtype | TR-MAMIL | 0.66 | 0.76 | 0.61 | 0.68 | 0.56 ± 0.08 | 0.006** |
ClassicMIL31 | 0.61 | 0.43 | 0.70 | 0.56 | 0.51 ± 0.01 | 0.235 | |
CLAM26 | 0.64 | 0.41 | 0.76 | 0.59 | 0.52 ± 0.07 | 0.339 | |
Wang et al.32 | 0.65 | 0.25 | 0.84 | 0.54 | 0.53 ± 0.04 | 0.144 | |
Improved_InceptionV3_MS33 | 0.62 | 0.55 | 0.65 | 0.60 | 0.52 ± 0.03 | 0.567 | |
TOAD27 | 0.64 | 0.48 | 0.72 | 0.60 | 0.54 ± 0.03 | 0.101 | |
TransMIL28 | 0.58 | 0.41 | 0.67 | 0.54 | 0.52 ± 0.01 | 0.297 | |
MRAN29 | 0.47 | 0.62 | 0.40 | 0.51 | 0.57 ± 0.02 | 0.567 |