Table 2 Overall results with statistical analysis on an independent TMA testing set and a TCGA testing set in (a) classification of abnormal p53 (mutation-type) and normal p53 (wild type), and (b) TP53 mutation prediction in EC
Task | Method | Acc. | Sens. | Spec. | MeanSS | AUROC (μ ± σ) | Fisher’s Test p-value |
---|---|---|---|---|---|---|---|
(a) Classification of abnormal and normal p53 (TMA) | TR-MAMIL | 0.78 | 0.70 | 0.86 | 0.78 | 0.78 ± 0.04 | <0.001*** |
ClassicMIL31 | 0.71 | 0.73 | 0.69 | 0.71 | 0.73 ± 0.01 | <0.001*** | |
CLAM26 | 0.75 | 0.68 | 0.81 | 0.74 | 0.77 ± 0.02 | <0.001*** | |
Wang et al.32 | 0.66 | 0.97 | 0.38 | 0.68 | 0.75 ± 0.02 | <0.001*** | |
Improved_InceptionV3_MS33 | 0.70 | 0.84 | 0.58 | 0.71 | 0.79 ± 0.03 | 0.496 | |
TOAD27 | 0.68 | 0.89 | 0.50 | 0.70 | 0.76 ± 0.04 | <0.001*** | |
TransMIL28 | 0.72 | 0.84 | 0.62 | 0.73 | 0.77 ± 0.04 | <0.001*** | |
MRAN29 | 0.73 | 0.61 | 0.83 | 0.72 | 0.74 ± 0.08 | <0.001*** | |
(b) TP53 mutation prediction | TR-MAMIL | 0.70 | 0.80 | 0.65 | 0.73 | 0.68 ± 0.08 | <0.001*** |