Table 4 Opposite parent-of-origin eQTLs in LCLs

From: Parent-of-origin effects on quantitative phenotypes in a large Hutterite pedigree

Phenotype

Sample size

rsid

chr:loc

Gene

βM – βP (SE)

Opposite effect p-value

Total cholesterol

381

rs7033776

9:36704465

POLR1E

0.0603 (0.399)

9.86E–04

Total cholesterol

381

rs7033776

9:36704465

PAX5

0.0608 (0.0253)

0.0162

Total cholesterol

381

rs7033776

9:36704465

FBXO10

0.0789 (0.0337)

0.019

LVMI

355

rs16853098

2:168013281

STK39

−0.238 (0.124)

0.055

Total cholesterol

381

rs7033776

9:36704465

FRMPD1

0.185 (0.0988)

0.060

  1. The most significant SNP for each phenotype (Table 2) was tested for opposite effect eQTLs with genes with TSS within 1 Mb of the SNP. The effect size corresponds to the difference in maternal and paternal effect sizes. Only the five most significant eQTLs are listed
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