Table 1 Similarity of VAR2CSAM200101 domains to different PfEMP1 from reference strains.
Domain_ID | Query_Domain_ID* (Ref: PfEMP1) | Score_per_AA | Domain cassette | UPS | Edit_Dist |
|---|---|---|---|---|---|
NTS | NTSpam (HB3:HB3var2csaA) | 4.804 | UPS_E | 4 | |
DBL1X | DBLpam1 (PFCLIN:PFCLINvar72) | 4.834 | DC2 | UPS_E | 45 |
DBL2X | DBLpam2 (IT4:IT4var04) | 4.357 | DC2 | UPS_E | 75 |
ID2 | CIDRpam (IGH:IGHvar41) | 5.044 | DC2 | UPS_E | 19 |
DBL3X | DBLpam3 (IGH:IGHvar41) | 5.227 | DC2 | UPS_E | 17 |
DBL4ε | DBLepam4 (IT4:IT4var04) | 4.831 | DC2 | UPS_E | 39 |
DBL5ε | DBLepam5 (RAJ116:RAJ116var25) | 4.755 | DC2 | UPS_E | 38 |
DBL6ε | DBLe10 (RAJ116:RAJ116var25) | 3.506 | DC2 | UPS_E | 109 |
DBL7ε | DBLe8 (DD2:DD2var28) | 5.519 | DC3 | UPS_B | 0 |
ATS | ATSpam1 (3D7:PFL0030c) | 4.382 | UPS_E | 68 |
