Fig. 6: Transcriptional responses of retrotransposon Gag-like sequences in the greenhouse from July to November. | Communications Biology

Fig. 6: Transcriptional responses of retrotransposon Gag-like sequences in the greenhouse from July to November.

From: Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression

Fig. 6

a Harukei-3 melon plants under non-stressed or heat-stressed conditions. Leaf disks were collected weekly using a hole punch. In total, 75 RNA-seq data were obtained in 18 independent Harukei-3 plants from July to November. b InterPro ID enrichment analysis in the genes that co-express with retrotransposon Gag-like sequences. Co-expression dataset is based on 75 leaf RNA-seq data obtained in the greenhouse. Heat shock protein genes are highly enriched in the genes. c Co-expression of Gag-like sequences with abiotic stress-related genes. Gag-like sequences and abiotic stress-related genes are co-expressed in one cluster (shown by red dashed circle). d Changes in gene expression in the greenhouse. Expression patterns of two retrotransposon Gag-like sequences are shown together with those of abiotic stress-related genes such as AtABF3-like and AtHSP21-like.

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