Table 1 Summary of assembled sequence lengths and predicted genes in the Harukei-3 genome. DNA sequence lengths of each chromosome and unanchored sequence are compared between Harukei-3 ver. 1.41 reference (left) and DHL92 CM3.6.1/4.0 reference (right). In Harukei-3, organelle genomes are assembled as one scaffold.
Harukei-3 (ver. 1.41) | Total (kb) | Determined (kb) | Undetermined (“NNN”, kb) | Gap | Gene count | DHL92 (CM3.6.1/4.0) | Total (kb) | Determined (kb) | Undetermined (“NNN”, kb) | Gap | Gene count |
|---|---|---|---|---|---|---|---|---|---|---|---|
chr01 | 36,940 | 36,524 | 416 | 16 | 3703 | chr01 | 37,038 | 31,291 | 5747 | 2273 | 2807 |
chr02 | 24,998 | 24,882 | 116 | 4 | 2493 | chr02 | 27,065 | 23,792 | 3273 | 1536 | 2064 |
chr03 | 30,037 | 29,911 | 126 | 2 | 2798 | chr03 | 31,667 | 26,381 | 5286 | 1887 | 2229 |
chr04 | 34,190 | 33,842 | 348 | 9 | 3660 | chr04 | 34,318 | 29,761 | 4557 | 2099 | 2833 |
chr05 | 29,725 | 29,488 | 236 | 10 | 2603 | chr05 | 29,324 | 24,896 | 4428 | 1864 | 2021 |
chr06 | 36,910 | 36,514 | 396 | 12 | 3580 | chr06 | 38,297 | 31,984 | 6313 | 2260 | 2847 |
chr07 | 27,657 | 27,296 | 360 | 7 | 2801 | chr07 | 28,958 | 24,137 | 4822 | 1594 | 2235 |
chr08 | 34,052 | 33,922 | 130 | 4 | 3243 | chr08 | 34,765 | 28,980 | 5786 | 2079 | 2569 |
chr09 | 24,854 | 24,615 | 239 | 6 | 2588 | chr09 | 25,243 | 21,670 | 3573 | 1577 | 2016 |
chr10 | 28,914 | 28,643 | 271 | 6 | 2617 | chr10 | 26,664 | 22,706 | 3958 | 1540 | 1801 |
chr11 | 34,404 | 34,011 | 393 | 7 | 3307 | chr11 | 34,457 | 28,852 | 5605 | 2001 | 2535 |
chr12 | 27,488 | 26,893 | 595 | 11 | 2701 | chr12 | 27,564 | 23,699 | 3865 | 1735 | 2056 |
Total | 370,168 | 366,542 | 3625 | 94 | 36,094 | Total | 375,360 | 318,148 | 57,212 | 22,445 | 28,013 |
Unanchored | 7215 | 2045 | 5170 | 43 | 645 | Unanchored | 41,642 | 19,177 | 22,465 | 22,207 | 1967 |
Mitochondria | 3273 | 3249 | 24 | 5 | 317 | ||||||
Chloroplast1 | 156 | 156 | 0 | 0 | 66 | ||||||
Chloroplast2 | 155 | 155 | 0 | 0 | 82 | ||||||
Chloroplast3 | 96 | 96 | 0 | 0 | 50 |
