Table 1 Whole-genome bisulfite sequencing datasets generated in this study.
From: A chicken DNA methylation clock for the prediction of broiler health
Tissue | Age (days) | No. of samples | Coverage | Conversion | Used for |
|---|---|---|---|---|---|
Jejunum | 14 | 3 | 122.0× | >99.9% | LMR mapping |
28 | 2 | 65.8× | >99.9% | LMR mapping | |
Ileum | 3 | 3 | 54.5× | >99.9% | Clock training |
15 | 3 | 37.0× | >99.9% | Clock training | |
34 | 3 | 49.0× | >99.9% | Clock training | |
Breast muscle | 3 | 3 | 52.7× | >99.9% | Clock training |
15 | 3 | 37.6× | >99.9% | Clock training | |
34 | 3 | 34.6× | >99.9% | Clock training | |
Spleen | 3 | 3 | 54.6× | >99.9% | Clock training |
15 | 3 | 38.9× | >99.9% | Clock training | |
34 | 3 | 34.9× | >99.9% | Clock training | |
Jejunum | 14 | 3 | 55.4× | >99.9% | Clock training |
16 | 3 | 54.7× | >99.9% | Clock training | |
34 | 3 | 57.7× | >99.9% | Clock training | |
Breast muscle | 14 | 3 | 55.9× | 98.2% | Clock validation |
28 | 3 | 56.7× | >99.5% | Clock validation | |
Jejunum | 14 | 3 | 43.3× | >99.9% | Clock performance |
16 | 3 | 47.4× | >99.9% | Clock performance | |
35 | 3 | 46.7× | >99.9% | Clock performance |
