Fig. 2: Unsupervised ML-based sample classification of the Japanese mtDNA variant data. | Communications Biology

Fig. 2: Unsupervised ML-based sample classification of the Japanese mtDNA variant data.

From: Genetic and phenotypic landscape of the mitochondrial genome in the Japanese population

Fig. 2

All the three unsupervised ML method classifications were performed on the WGS variant data of the Japanese population (n = 1928). a The unrooted phylogenetic tree using maximum-parsimony method. b The 3D plot of the top three components of PCA. c The plot of the two components of UMAP. Each color and marker represents haplogroups. Distinction between the M and N haplogroup clusters is displayed with dotted lines in each panel.

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