Fig. 3: Dimensional reduction captures the transcriptional response to Dex. | Communications Biology

Fig. 3: Dimensional reduction captures the transcriptional response to Dex.

From: Single-cell RNA sequencing reveals a heterogeneous response to Glucocorticoids in breast cancer cells

Fig. 3

a PCA plot of all 2400 cells from the scRNAseq color-coded by treatment timepoint. b PCA plots depicting each timepoint individually colored against all other cells. c tSNE plot of all 2400 cells from the scRNAseq color-coded by treatment timepoint. d tSNE plots depicting each timepoint individually colored against all other cells. e, f PCA and tSNE plots depicting de novo PCA-based clusters. g Histograms depicting the number of cells from each treatment timepoint present in the de novo PCA-based clusters.

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