Fig. 2: Relation to other methods.
From: DNA copy number motifs are strong and independent predictors of survival in breast cancer
a Circos plots of arm-wise CARMA scores for two selected samples in the METABRIC cohort, together with results from GISTIC, CINdex, and CAAI. Only focal aberrations are shown for GISTIC, and scores indicate whether a significant region according to GISTIC is aberrant in this sample. The color indicates the direction of change (loss or gain). For CINdex and CAAI, continuous scores are shown. b Relative distribution of CARMA scores within GISTIC regions. Each bar corresponds to a region which is found to be significant across all METABRIC samples according to GISTIC, and which is called as a gain or loss in the given sample. The colors in each bar represents the relative contributions of the six CARMA scores in that region, found by dividing the CARMA scores in a region by their sum. Regions are ordered according to decreasing contribution of AMP and then on increasing contribution of DEL.
