Fig. 1: Genome feature and genomic variation of O. rufipogon.
From: SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation
The outer circle represents the 12 chromosomes of O. sativa, along with the gene density (non-overlapping, window size = 500 Kb). Moving inward, the four circles with line plot refer to the SNP, InDel, SV, and CNV distribution, respectively (non-overlapping, window size = 500 Kb). O. rufipogon is indicated in blue, while O. nivara is represented in red. The inner two circles plotted with heat map display the sequence similarities of orthologous gene pairs between O. sativa and O. rufipogon (blue), and between O. sativa and O. nivara (red).
