Fig. 2: Multi-species comparative analysis and genomic variation among O. rufipogon, O. nivara and O. sativa.
From: SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation
a Increase and decrease of gene numbers in pan- and core- genome. b Sequence composition of the pan-genome among RUF, NIV, and SAT. c Exemplar patterns of single-nucleotide polymorphisms on rice Chromosome 1 (see Supplementary Fig. 9 for the other 11 chromosomes). d Number of R-genes and MADS-box genes affected by CNVs. e Functional enrichment of genes affected by PAVs. The top 10 PFAM functional categories for each PAV type are shown. Asterisk indicates the significance of FDR < 0.05, while double asterisk means FDR < 0.01. PAV types are represented in a customized format, of which RS10 indicates that a PAV is present in RUF but absent in SAT, NS10 denotes that a PAV is present in NIV but absent in SAT, RS01 shows that a PAV is absent in RUF but present in SAT, and NS01 signifies that a PAV is absent in RUF but present in SAT.
