Table 1 Summary of the genome assembly and annotation of O. rufipogon.
From: SMRT sequencing of the Oryza rufipogon genome reveals the genomic basis of rice adaptation
Assembly | |
|---|---|
SMRT Sequencing Depth (×) | 102.3 |
10X Sequencing Depth (×) | 103.0 |
Hi-C Sequencing Depth (×) | 269.0 |
Estimated genome size (Mb) | 388.0 |
Assembled sequence length (Mb) | 380.51 |
Scaffold N50 (Mb) | 30.20 |
Contig N50 (Kb) | 1096.43 |
Annotation | |
|---|---|
Number of predicted protein-coding genes | 34,830 |
Average gene length (bp) | 2921 |
tRNAs | 637 |
rRNAs | 1085 |
snoRNAs | 442 |
snRNAs | 117 |
miRNAs | 245 |
Transposable elements (%) | 44.14 |
