Table 4 Single-locus GWAS for social genetic effects (SGE) in Yorkshire pigs.
From: A combined GWAS approach reveals key loci for socially-affected traits in Yorkshire pigs
Trait | SSC | Position (bp) | Range (Mb) | Allele | P_value | Candidate Gene |
|---|---|---|---|---|---|---|
SGE_ADFI | 6 | 18635874 | 18.14–19.14 | C/G | 8.94E–09 | CDH1, CDH3, ZFP90, BBS2, MT4, MT3, MT1A, NUP93, MIR138-2, HERPUD1, SLC12A3, NLRC5, CPNE2, FAM192A |
6 | 18635895 | 18.14–19.14 | A/G | 8.94E–09 | ||
6 | 18639708 | 18.14–19.14 | C/T | 8.94E–09 | ||
6 | 18641480 | 18.14–19.14 | C/T | 8.94E–09 | ||
6 | 18642431 | 18.14–19.14 | C/G | 8.94E–09 | ||
6 | 18643649 | 18.14–19.14 | A/G | 8.94E–09 | ||
6 | 18644213 | 18.14–19.14 | T/C | 8.94E–09 | ||
6 | 18645373 | 18.15–19.15 | A/T | 8.94E–09 | ||
6 | 18645626 | 18.15–19.15 | A/G | 8.94E–09 | ||
6 | 18640605 | 18.14–19.14 | A/G | 1.00E–08 | ||
6 | 25649764 | 25.15–26.15 | C/T | 1.67E–09 | CDH11 | |
6 | 25651261 | 25.15–26.15 | T/C | 2.68E–09 | ||
6 | 46451435 | 45.95–46.95 | A/G | 1.39E–08 | OVOL3, POLR2I, TBCB, CAPNS1, COX7A1, ZNF146, ZNF565, ZNF567, ZNF461, ZNF382, ZNF260, ZNF566, ZFP82, ZFP14, ZNF793, ZNF527, ZNF569, U2, ZNF570, ZFP30, WDR87 | |
6 | 46448592 | 45.95–46.95 | T/G | 3.63E–11 | ||
8 | 79506792 | 79.01–80.01 | C/T | 3.16E–08 | IQCM | |
8 | 79525267 | 79.03–80.03 | A/T | 3.16E–08 | ||
8 | 79529184 | 79.03–80.03 | G/A | 3.16E–08 | ||
8 | 79529190 | 79.03–80.03 | T/C | 3.16E–08 | ||
8 | 79529891 | 79.03–80.03 | C/T | 3.16E–08 | ||
SGE_ADG | 6 | 25649764 | 25.15–26.15 | C/T | 3.00E–09 | CDH11 |
6 | 25651261 | 25.15–26.15 | T/C | 3.68E–09 | ||
8 | 79506792 | 79.01–80.01 | C/T | 3.17E–09 | IQCM | |
8 | 79525267 | 79.03–80.03 | A/T | 3.17E–09 | ||
8 | 79529184 | 79.03–80.03 | G/A | 3.17E–09 | ||
8 | 79529190 | 79.03–80.03 | T/C | 3.17E–09 | ||
8 | 79529891 | 79.03–80.03 | C/T | 3.17E–09 |
