Table 3 Details of GWAS-informed markers (n = 22) used to predict risk of subsequent PI-IBS.
From: Campylobacter jejuni genotypes are associated with post-infection irritable bowel syndrome in humans
Variant | gene.family (PIRATE) | Locus ID (NCTC11168) | gene.name | Prediction accuracy | |
|---|---|---|---|---|---|
203498_C_C-core | g00050 | Cj0112 | tolB | 60.8% | |
1123058_C_C-core | g01209 | Cj0118 | ttcA | 60.8% | |
816843_T_T-core | g02780 | Cj0231c | nrdB | 60.8% | |
690709_G_G-core | g01096 | Cj0289c | NA | 60.8% | |
# | 622830_C_C-core | g00792 | Cj0513 | purS | 60.8% |
* | 859191_C_C-core | g00505 | Cj0720c | flaC | 60.8% |
1267111_G_G-core | g00879 | Cj0862c | pabB | 60.8% | |
398511_A_A-core | g00018 | Cj1027c | gyrA | 60.8% | |
1326123_T_T-core | g00773 | Cj1042c | exsA | 60.8% | |
222728_C_C-core | g00083 | Cj1120c | pglF | 60.8% | |
940026_T_T-core | g01168 | Cj1126c | pglB | 60.8% | |
1159550_C_C-core | g00762 | Cj1199 | efe | 60.8% | |
883365_A_A-core | g01037 | Cj1264c | hybD | 62.0% | |
* | 1265794_T_T-core | g00380 | Cj1351 | pldA | 62.0% |
1074024_G_G-core | g03292 | Cj1411c | ptlI | 62.0% | |
431464_G_G-core | g00550 | Cj1412c | NA | 62.0% | |
469831_G_G-core | g00386 | Cj1631c | NA | 62.0% | |
469836_A_A-core | g00386 | Cj1631c | NA | 62.0% | |
470282_A_A-core | g00386 | Cj1631c | NA | 62.0% | |
469774_G_G-core | g00386 | Cj1631c | NA | 62.0% | |
597240_G_G-core | g01291 | Cj1641 | murE | 62.0% | |
g01925_00012-c | g01925 | Cj1711c | rsmA | 62.0% |
