Table 1 Comparison of Musa acuminata (DH-Pahang) genome assemblies.
From: Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
D’hont et al. 9 V1 | Martin et al. 10 V2 | This study V4 | |
|---|---|---|---|
Number of contigs | 29,437 | 19,312 | 124 |
Cumulative size (bp) | 390,477,446 | 405,522,014 | 484,058,756 |
N50 (bp) L50 | 28,319 3,428 | 43,237 2,363 | 32,091,396 7 |
N90 (bp) L90 | 5,108 16,551 | 9,026 10,327 | 6,704,534 16 |
Longest contig (bp) | 306,660 | 602,020 | 47,719,527 |
Number of chromosomes | 11 | 11 | 11 |
Cumulative size (bp) | 331,812,599 | 397,008,016 | 468,821,802 |
Cumulative size (ACGT only) | 286,824,765 | 363,519,833 | 468,133,046 |
N50 (bp) L50 | 30,470,408 5 | 37,593,364 5 | 43,931,232 5 |
N90 (bp) L90 | 25,514,024 10 | 29,070,452 10 | 34,826,100 10 |
Longest (bp) | 35,439,739 A08 | 44,889,171 A08 | 51,314,288 A08 |
% of N | 13.56% | 8.44% | 0.68% |
% of estimated genome | 63.4% | 75.9% | 89.6% |
% of estimated genome (ACGT only) | 54.8% | 69.5% | 89.5% |
Complete BUSCO (N = 1,614) | 92.6% | 98.5% | 98.8% |
