Table 1 Animal fecal metagenomic studies of the probiotic intervention included in this meta-analysis.
Animal | Interventions | Dose (CFU/d) | Duration | Fecal sample size | DNA preparation | Sequencing platform | Average sequencing target depth (GB) | Read length (bp) | Sequencing data |
|---|---|---|---|---|---|---|---|---|---|
C57BL6/N mice | Probiotic mixture | 109 | 38 days | 4 | EZ1 Virus Mini kit v 2.0 (Qiagen) | Illumina HiSeq 2000 | 4.62 | 100 | SRP062583 |
C57BL6/J mice | Lactobacillus rhamnosus GG | 108 | 8 weeks | 2 | QIAamp Fast DNA Stool Mini Kit | Illumina HiSeq1500 | 5.74 | 100 | PRJNA293015 |
Dog | Probio-Fit® | 2 × 1010 | 60 days | 40 | Qiagen DNA Stool Mini-Kit | Illumina HiSeq XTEN | 2.84 | 150 | PRJNA524271 |
Rat | Lactobacillus casei ATCC334 | 2 × 108 | 30 days | 14 | No mention | BGISEQ-500 | 7.19 | 100 | PRJEB22973 |
C57BL6/J mice | Lactobacillus plantarum HNU082 | 4 × 108 | 4 weeks | 12 | QIAamp® DNA Stool Mini Kit (Qiagen) | Illumina HiSeq 2500 | 5.89 | 150 | PRJNA608079 |
