Table 2 Fecal metabolite clusters significantly altered (FDR < 0.05) in Mecp2-e1−/+ vs. Mecp2-e1 + /+ females.

From: Sex disparate gut microbiome and metabolome perturbations precede disease progression in a mouse model of Rett syndrome

Cluster name

Num. analytes/ cluster

p-value

FDR

Key compound

Num. altered metabolites

Num. increased

Num. decreased

Unsaturated triglycerides

39

1.5E-16

3.7E-15

Triglyceride 52:1

26

8

18

Dipeptides

4

2.9E-08

2.3E-07

Ala-Ala

4

3

1

Phosphatidylcholines

26

3.4E-08

2.3E-07

Phosphatidylcholine 32:0

10

5

5

Amino acids, basic

5

3.8E-08

2.3E-07

N-Methyltyrosine

5

4

1

Unsaturated fatty acids

24

0.000036

0.00017

Fatty Acid 18:2

10

5

5

Indoles

3

0.0001

0.0004

N-.alpha.-Acetyl-L-arginine

3

1

2

Azoles

3

0.00015

0.0005

Creatinine

2

2

0

Phosphatidylethanolamines

8

0.00034

0.001

Phosphatidylethanolamine 34:1

3

2

1

Pyridines

8

0.00084

0.0022

3-Aminopyridine

4

4

0

Carnitines

5

0.0013

0.0031

3-Dehydrocarnitine

3

3

0

Unsaturated ceramides

8

0.0023

0.005

Ceramide d39:1

5

1

4

Saturated triglycerides

3

0.0025

0.005

Triglyceride 46:0

3

0

3

Amino acids

5

0.0047

0.0087

Isoleucine

3

3

0

Diglycerides

8

0.021

0.037

Diglyceride 38:5

4

3

1

Saturated FA

18

0.031

0.05

Fatty Acid 20:0

3

3

0

  1. Chemical enrichment clustering analysis was carried out on known metabolites using CHEMRich to identify clusters of chemically similar fecal metabolites that were significantly altered in mutant (−/+) vs. wild-type (+/+) females longitudinally across disease course (measurements taken at 5, 9, and 19 weeks of age). Cluster size is the number of metabolites in each cluster and altered metabolites are the number of metabolites within that cluster that were altered in mutant vs. wild-type females. The key compound is the metabolite with the lowest p-value in each cluster. The number of altered metabolites that were increased and decreased in mutant vs. wild-type females are represented in the adjacent columns. N = 8/genotype.