Fig. 3: Comparison of mutual distances and orientations for the chlorophyll strongest coupled pairs in LHCSR1.
From: Structure of the stress-related LHCSR1 complex determined by an integrated computational strategy
LHCSR1 Cluster 4 is shown in orange and CP29 is shown in blue. The first column corresponds to the Mg–Mg distance between chlorophylls, the second column to the mutual rotation of the chlorophylls in the plane defined by the chlorophyll ring, and the last column corresponds to a rotation in the plane perpendicular to the chlorophyll ring. The analysis was performed on 40,000 configurations extracted every 50 ps of the MD simulation for LHCSR1 and on 30,000 configurations with the same time-step for CP29.
