Table 2 Top SNPs (P < 5Eāˆ’8) associated with serum copper levels in the GWAS meta-analysis.

From: Genome-wide association and Mendelian randomization study of blood copper levels and 213 deep phenotypes in humans

Metals

SNP

CHR

POS (hg19)

Gene

Function

EA

NEA

EAF

FAMHES

MEWHC

Meta (fixed-effect)

BETA

SE

P

N

BETA

SE

P

N

BETA

SE

P

N

Q

I2

SCLs

rs671

12

112241766

ALDH2

exonic

A

G

0.252

āˆ’0.226

0.038

4.52Eāˆ’09

1798

āˆ’0.157

0.062

1.15Eāˆ’02

685

āˆ’0.207

0.033

2.21Eāˆ’10

2483

0.350

0

Ā 

rs35691438

3

148940672

CP(+0.84 kb)

upstream

C

T

0.325

0.175

0.035

8.29Eāˆ’07

1798

0.225

0.064

4.65Eāˆ’04

685

0.187

0.031

1.63Eāˆ’09

2483

0.497

0

  1. Abbreviations: SCLs serum copper levels, SNP single-nucleotide polymorphism, CHR chromosome, Function functional consequence on the gene, POS position, EA effect allele, NEA non-effect allele, EAF effect allele frequency, N the sample size of the genome-wide association studies or meta-analysis; Q p-value for Cochran’s Q statistic, I2 heterogeneity index (0āˆ’100 scale), FAMHES the Fangchenggang Area Male Health and Examination Survey, MEWHC the manganese-exposed workers healthy cohort, Meta meta-analysis of FAMHES and MEWHC.