Table 2 The average number of SNPs for the 4 mixture components (k1, k2, k3, k4) retrieved from BayesR3C.

From: BayesR3 enables fast MCMC blocked processing for largescale multi-trait genomic prediction and QTN mapping analysis

Heritability

Class 1

Class 2

k1

k2

k3

k4

k1

k2

k3

k4

H10

3365

60

495

19

392822

3060

57

0.03

H30

2900

328

695

16

393783

2155

0.3

0.03

Expected

0

3485

500

15

396000

0

0

0

  1. Class 1 contains the 4000 casual variants and where the expected counts are seen the row labelled Expected. Class 2 contains no causal variants. Note, for class 1 the number of SNPs does not add up to the expected 4000 because 61 variants have a minor allele frequency less than 0.002 in this data set, which was the threshold of inclusion into the analysis.
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