Fig. 4: Maximum a posteriori species tree of the gecko dataset4.
From: Quantitatively defining species boundaries with more efficiency and more biological realism
The tree (left) was constructed from 129 genomic loci (right), for ϵ = 10−2 substitutions per site. Branches are coloured by effective population size θ. Only segregating sites (i.e., SNPs which vary among samples) are displayed, and sites are coloured by minor allele (A/C: homozygous; B: heterozygous). The misclassified gecko is indicated by a red asterisk *. The analysis was performed using SNAPPER28 and the figure was generated using PEACH Tree48.
