Fig. 2: Transcriptome profiling during C5 and LF berry development. | Communications Biology

Fig. 2: Transcriptome profiling during C5 and LF berry development.

From: A recessive mutation in muscadine grapes causes berry color-loss without influencing anthocyanin pathway

Fig. 2

a The principal components analysis (PCA) of the samples’ replicates, where normalized counts were transformed to the variance stabilizing transformation (VST) using DESeq2. Each unique combination of a developmental stage was given a distinctive color. b–e By using DESeq2 and EdgeR pipeline, DEGs from each comparison were identified with fold2change >1.5 or <–1.5 (P-adjusted < 0.05). b and c Bar plot of differentially expressed genes (DEGs) in C5 and LF when each stage was compared to its former one. d and e Venn diagrams and bar plots of DEGs resulted from comparing equivalent stages in C5 and LF genotypes.

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