Fig. 3: Module–trait associations and gene relationship to the trait in modules of interest. | Communications Biology

Fig. 3: Module–trait associations and gene relationship to the trait in modules of interest.

From: A recessive mutation in muscadine grapes causes berry color-loss without influencing anthocyanin pathway

Fig. 3

a Module–trait associations between RNA-seq data and anthocyanin-related traits, including TAC, delphinidin (DEL), cyanidin (CYA), petunidin (PET), peonidin (PEN), and malvidin (MAL) from C5 genotype throughout berry developmental stages. The correlation coefficient between a given module and traits is indicated by the color of the cell at the row–column intersection. Each row corresponds to a module (C1–C14). The left panel shows the assigned number of genes to each module, whether the number of total input genes or DEGs from C5stages, LFstages, and C5stage–LFstage comparisons. DEGs from each comparison were identified with fold2change > 1.5 or <–1.5 (P-adjusted < 0.05). The modules of interest were shown in bold and were selected for further analysis (indicated as ‘In focus’). Blue and red are the color key that represents ‘r’ values. The gene significance in modules C3 (b) and C11 (c). The ‘GS.TAC’ is the gene significance with the TAC. The module eigengene connectivity (kME) was calculated for each gene within the C3 and C11 modules.

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