Fig. 4: Comparison of expression profiles of 14 DEGs from module C3 as measured by qPCR in C5 and LF genotypes at different berry developmental stages. | Communications Biology

Fig. 4: Comparison of expression profiles of 14 DEGs from module C3 as measured by qPCR in C5 and LF genotypes at different berry developmental stages.

From: A recessive mutation in muscadine grapes causes berry color-loss without influencing anthocyanin pathway

Fig. 4

The genes encode chorismate mutase (CM2 and CM3), stilbene synthase (STS1 and STS5), teosinte branched1/cincinnata/proliferating cell factor (TCP9), chalcone synthase (CHS1), glutathione S-transferase (GST1, GST3, and GST4b), ATP-binding cassette transporters (ABC1 and ABC2), β-glucosidase (β-Glu), and peroxidase (POD48 and POD52). The y-axis represents the mean expression level (±SD) determined by qPCR. The x-axis in each chart represents the developmental stages. The mean expression level was calculated from three biological replicates each with three technical replicates (n = 9). Standard curves were used to calculate the number of target gene molecules per sample. These were then normalized relative to the expression of Actin and EF1. Correlations (r) between qPCR and RNA-seq expressions were calculated and their associated P-values are indicated.

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