Table 3 Codon counts in the Medakamo hakoo genome regions for the peptides detected during the proteomic analysis.
From: Genomic analysis of an ultrasmall freshwater green alga, Medakamo hakoo
Codon (amino acid) | Experiment 1 (PSMs>1) | Experiment 2 (PSMs>1) |
|---|---|---|
AAA (K) | 6309 | 5194 |
AAC (N) | 12,898 | 10,948 |
AAG (K) | 18,094 | 15,609 |
AAU (N) | 997 | 822 |
ACA (T) | 1786 | 1371 |
ACC (T) | 14,419 | 12,212 |
ACG (T) | 21,878 | 18,633 |
ACU (T) | 1130 | 921 |
AGA (R) | 379 | 293 |
AGC (S) | 5084 | 4266 |
AGG (R) | 1615 | 1282 |
AGU (S) | 1098 | 950 |
AUA (I) | 82 | 61 |
AUC (I) | 18,464 | 15,502 |
AUG (M) | 10,577 | 8950 |
AUU (I) | 2817 | 2417 |
CAA (Q) | 3073 | 2532 |
CAC (H) | 14,029 | 11,542 |
CAG (Q) | 13,184 | 11,308 |
CAU (H) | 608 | 477 |
CCA (P) | 3572 | 2811 |
CCC (P) | 24,383 | 20,823 |
CCG (P) | 31,004 | 26,653 |
CCU (P) | 3661 | 2873 |
CGA (R) | 983 | 725 |
CGC (R) | 30,194 | 25,637 |
CGG (R) | 15,663 | 13,210 |
CGU (R) | 2280 | 1860 |
CUA (L) | 464 | 378 |
CUC (L) | 15,922 | 13,591 |
CUG (L) | 46,175 | 39,648 |
CUU (L) | 811 | 667 |
GAA (E) | 11,179 | 9282 |
GAC (D) | 38,955 | 33,385 |
GAG (E) | 23,857 | 20,700 |
GAU (D) | 2241 | 1886 |
GCA (A) | 3850 | 3068 |
GCC (A) | 69,968 | 59,544 |
GCG (A) | 66,218 | 56,989 |
GCU (A) | 5892 | 5020 |
GGA (G) | 2275 | 1941 |
GGC (G) | 63,865 | 54,584 |
GGG (G) | 14,858 | 12,814 |
GGU (G) | 4532 | 3960 |
GUA (V) | 245 | 187 |
GUC (V) | 32,137 | 27,565 |
GUG (V) | 21,814 | 18,532 |
GUU (V) | 1116 | 957 |
UAA (STOP) | 80 | 59 |
UAC (Y) | 13,834 | 11,742 |
UAG (STOP) | 97 | 101 |
UAU (Y) | 612 | 487 |
UCA (S) | 1326 | 1041 |
UCC (S) | 22,010 | 18,535 |
UCG (S) | 13,880 | 11,897 |
UCU (S) | 2287 | 1972 |
UGA (STOP) | 864 | 782 |
UGC (C) | 8086 | 6759 |
UGG (W) | 9595 | 8077 |
UGU (C) | 963 | 767 |
UUA (L) | 358 | 313 |
UUC (F) | 14,709 | 12,472 |
UUG (L) | 4847 | 4122 |
UUU (F) | 7298 | 6096 |
