Table 1 Statistics for the genome assembly of noble rhubarb.
Assembly | |
---|---|
Assembled size | 1.36 Gbp |
GC content | 39% |
Number of contig | 245 |
N50 of contig | 9.8 Mbp |
Longest contig | 23.56 Mbp |
BUSCOs | C:96.1% (S:87.3%, D:7.2%), F:1.6%, M:3.9% |
Merqury QV & Error rate | 46.3 & 2.33471e−05 |
Merqury k-mer completeness | 99.24% |
LAI (LTR Assembly Index) | 9.90 |
Annotation | |
Number of protein coding genes | 58,950 |
Number of tRNA | 3310 |
Number of sRNA | 4798 |
Content of repeats | 1,002.07 Mbp (73.54%) |
-LTR | 552.44 Mbp (40.54%) |
-DNA transposons | 102.44 Mbp (7.52%) |
-LINEs | 49.85 Mbp (3.66%) |
-SINEs | 1.53 Mbp (0.11%) |
-Unclassised Repeats | 279.86 Mbp (20.54%) |