Table 1 Reference panel data resource.

From: Transcriptome-wide association studies: recent advances in methods, applications and available databases

Dataset

Tissue

samples

Ancestry

Updated year

PMID

Link

GTEx

54 tissues

15,201

White, AA, AS, Others

2019

32913098

https://gtexportal.org/

TCGA

67 tissues

8094

White, AA, AS, NA, Others

2021

-

https://portal.gdc.cancer.gov/;models available in http://gusevlab.org/projects/fusion/

DGN

Whole Blood

922

EU

2014

24092820

https://explorer.nimhgenetics.org/

METSIM

Adipose, Blood

563

Fins

2010

28119442

models available in http://gusevlab.org/projects/fusion/

NTR

Blood

5339

Netherlands

2014

20477721

https://www.ncbi.nlm.nih.gov/gap/?term=phs000486.v1.p1

YFS

Blood

1264

Fins

2011

29985430

models available in http://gusevlab.org/projects/fusion/

CMC

Brain (DLPFC)

452

CAU, AA, Hispanic, EA

2021

27668389

https://www.synapse.org/

eQTLGen Consortium

Blood, PBMC

31,684

EU, Others

2020

34475573

https://www.eqtlgen.org/

GEU

LCL

462

CEU, Fins, Others

2012

24037378

https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-GEUV-1?query=E-GEUV-1

BrainSeq

Brain (DLPFC)

175

CAU

2015

26687217

http://eqtl.brainseq.org/phase1/

ROS/MAP

Brain (DLPFC)

2091

AA, Hispanic, Others

2020

22471860; 22471867

https://www.synapse.org/

AD Knowledge Portal

Brain, Blood

2573

-

2022

33085189

https://adknowledgeportal.org/

PsychENCODE

Brain

2198

-

2015

26605881

https://psychencode.synapse.org/

  1. DLPFC dorsolateral prefrontal cortex, LCL lymphoblastoid cell line, PBMC peripheral blood mononuclear cell, AA African American, AS Asian, EU European, EA East Asian, FIN Finns, CAU Caucasian, NA Native American, CEU Central European.