Table 1 Summary of the A. sinensis (QH) genome assembly and annotation.
Genome assembly | Total length of contigs (bp) | 2,156,060,282 | |
GC content (%) | 35.60 | ||
N50 length (contigs) (bp) | 4,960,951 | ||
Longest contig (bp) | 20,518,691 | ||
Total length of scaffolds (bp) | 2,155,436,444 | ||
N50 length (scaffolds) (bp) | 198,273,161 | ||
Longest scaffold (bp) | 228,427,485 | ||
Transposable elements | Annotation | Percentage | Total length (bp) |
Retrotransposons | 59.24 | 1,276,667,829 | |
DNA transposons | 3.83 | 82,512,686 | |
Others | 17.17 | 370,118,161 | |
Total | 80.24 | 1,729,298,676 | |
Protein-coding genes | Predicted high-confidence genes | 41,040 | |
Average gene length (bp) | 3951.49 | ||
Average coding sequence length (bp) | 1126.57 | ||
Average exon length (bp) | 240.09 | ||
Average intron length (bp) | 765.08 | ||
Functionally annotated | 39,300 | ||
