Table 1 The number of genes and proteins that are differentially expressed in the TNBC cell lines compared to 10A

From: One-pot method for preparing DNA, RNA, and protein for multiomics analysis

Plot quadrant (gene/protein)

10A vs NeoT

10A vs T1

10A vs CA1

00 (not significant)

2065

2505

2083

10 (up in gene)

302

76

217

-10 (down in gene)

161

65

168

01 (up in protein)

69

49

91

0–1 (down in protein)

43

37

79

11 (up in both)

132

43

97

-1-1 (down in both)

63

60

95

  1. Significance is defined as FDR p value <0.05 and absolute log2 fold change >1. A log2 fold change >1 indicates an upregulated molecule in 10A compared to the TNBC cell line. The colored dots in the correlation plot are indicated by the plot quadrant where 00 indicates both gene and protein are not significant, 01 indicates gene is not significant but the protein is significant and upregulated, while a 0–1 indicates gene is not significant but the protein is significant and downregulated.
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