Fig. 1: Phylogenetic tree and pairwise identity matrix of SCBV isolates. | Communications Biology

Fig. 1: Phylogenetic tree and pairwise identity matrix of SCBV isolates.

From: Identification of a sugarcane bacilliform virus promoter that is activated by drought stress in plants

Fig. 1

a Tree and matrix based on the partial sequence of the reverse transcriptase/ribonuclease H (RT/RNase H) genomic region (0.8 kb). b Tree and matrix based on the entire promoter region (0.6–0.9 kb) of 17 SCBV isolates. Isolates sequenced in this study are highlighted in red. The other nine isolates were retrieved from GenBank: SCBV-BRU (JN377537), SCBIMV-QLD (NC_003031), SCBV-BT (JN377536), SCBV-BO91 (JN377533), SCBV-Iscam (JN377534), SCBV-BB (JN377535), SCBGDV-Batavia (FJ439817), SCBGAV-R570 (FJ824813), SCBGAV-B51129 (FJ824814). Classification of SCBV genotypes was performed according to Janiga et al.16. Each phylogenetic tree was constructed using the neighbor-joining (NJ) method and bootstrap values (1000 replicates) are indicated at tree nodes. Bootstrap values below 60% were collapsed and ComYMV (NC 001343) was used as outgroup. Scale bar is in number of substitutions per nucleotide.

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