Table 1 Genome databases used for synteny analysis of gastric and agastric Actinopterygii species and the evolutionary analysis of pga in vertebrates
From: Convergent gene losses and pseudogenizations in multiple lineages of stomachless fishes
Category | Species | Genome database | Remarks |
|---|---|---|---|
ray-finned fish | spotted gar (Lepisosteus oculatus) | GCF_000242695.1100 | synteny analysis, evolution of pga |
ray-finned fish | Asian arowana (Scleropages formosus) | GCF_900964775.1101 | synteny analysis, evolution of pga |
ray-finned fish | golden-line barbell (Sinocyclocheilus grahami) | GCF_001515645.1102 | synteny analysis |
ray-finned fish | zebrafish (Danio rerio) | GCF_000002035.617 | synteny analysis |
ray-finned fish | fathead minnow (Pimephales promelas) | GCF_016745375.1103 | synteny analysis |
ray-finned fish | channel catfish (Ictalurus punctatus) | GCF_001660625.3104 | synteny analysis, evolution of pga |
ray-finned fish | Mexican tetra (Astyanax mexicanus) | GCF_023375975.1105 | synteny analysis, evolution of pga |
ray-finned fish | rainbow trout (Oncorhynchus mykiss) | GCF_013265735.2106 | synteny analysis, evolution of pga |
ray-finned fish | northern pike (Esox lucius) | GCF_011004845.1107 | synteny analysis, evolution of pga |
ray-finned fish | Atlantic cod (Gadus morhua) | GCF_902167405.123 | synteny analysis, evolution of pga |
ray-finned fish | greater amberjack (Seriola dumerili) | GCF_002260705.1108 | synteny analysis, evolution of pga |
ray-finned fish | Japanese medaka (Oryzias latipes) | GCF_002234675.118 | synteny analysis |
ray-finned fish | turquoise killifish (Nothobranchius furzeri) | GCF_027789165.1109 | synteny analysis |
ray-finned fish | platyfish (Xiphophorus maculatus) | GCF_002775205.1110 | synteny analysis |
ray-finned fish | Nile tilapia (Oreochromis niloticus) | GCF_001858045.224 | synteny analysis, evolution of pga |
ray-finned fish | clown anemonefish (Amphiprion ocellaris) | GCF_022539595.1111 | synteny analysis, evolution of pga |
ray-finned fish | humphead wrasse (Cheilinus undulatus) | GCF_018320785.1112 | synteny analysis |
ray-finned fish | ballan wrasse (Labrus bergylta) | GCF_900080235.121 | synteny analysis |
ray-finned fish | gilthead seabream (Sparus aurata) | GCF_900880675.1113 | synteny analysis, evolution of pga |
ray-finned fish | three-spined stickleback (Gasterosteus aculeatus) | GCF_016920845.122 | synteny analysis, evolution of pga |
ray-finned fish | ocean sunfish (Mola mola) | GCA_001698575.1114 | synteny analysis, evolution of pga |
ray-finned fish | Japanese pufferfish (Takifugu rubripes) | GCF_901000725.219 | synteny analysis, evolution of pga |
ray-finned fish | spotted green pufferfish (Tetraodon nigroviridis) | GCA_000180735.120 | synteny analysis, evolution of pga |
lobe-finned fish | coelacanth (Latimeria chalumnae) | GCF_000225785.137 | synteny analysis, evolution of pga |
tetrapod | tropical clawed frog (Xenopus tropicalis) | GCF_000004195.438 | synteny analysis, evolution of pga |
tetrapod | anole lizard (Anolis carolinensis) | GCF_000090745.239 | synteny analysis, evolution of pga |
tetrapod | platypus (Ornithorhynchus anatinus) | GCF_004115215.240 | synteny analysis |
tetrapod | echidna (Tachyglossus aculeatus) | GCF_015852505.125 | synteny analysis |
tetrapod | human (Homo sapiens) | GCF_000001405.4041 | synteny analysis, evolution of pga |
ray-finned fish | reedfish (Erpetoichthys calabaricus) | GCF_900747795.2 | evolution of pga |
ray-finned fish | gray bichir (Polypterus senegalus) | GCF_016835505.1115 | evolution of pga |
ray-finned fish | sterlet (Acipenser ruthenus) | GCF_902713425.1116 | evolution of pga |
ray-finned fish | Mississippi paddlefish (Polyodon spathula) | GCF_017654505.1117 | evolution of pga |
ray-finned fish | Brienomyrus brachyistius | GCF_023856365.1118 | evolution of pga |
ray-finned fish | Paramormyrops kingsleyae | GCF_002872115.1119 | evolution of pga |
ray-finned fish | Indo-pacific tarpon (Megalops cyprinoides) | GCF_013368585.1 | evolution of pga |
ray-finned fish | European eel (Anguilla anguilla) | GCF_013347855.1120 | evolution of pga |
ray-finned fish | Atlantic herring (Clupea harengus) | GCF_900700415.2121 | evolution of pga |
tetrapod | cow (Bos taurus) | GCF_002263795.3122 | evolution of pga |
tetrapod | chicken (Gallus gallus) | GCF_016699485.2123 | evolution of pga |
tetrapod | Japanese gecko (Gekko japonicus) | GCF_001447785.1124 | evolution of pga |
tetrapod | Reeves’s turtle (Mauremys reevesii) | GCF_016161935.1125 | evolution of pga |
tetrapod | Congo dwarf clawed frog (Hymenochirus boettgeri) | GCA_019447015.1 | evolution of pga |
cartilaginous fish | great white shark (Carcharodon carcharias) | GCF_017639515.1126 | evolution of pga |
cartilaginous fish | whale shark (Rhincodon typus) | GCF_021869965.1127 | evolution of pga |
cartilaginous fish | zebra shark (Stegostoma tigrinum) | GCF_030684315.1127 | evolution of pga |
cartilaginous fish | whitespotted bambooshark (Chiloscyllium plagiosum) | GCF_004010195.1128 | evolution of pga |
cartilaginous fish | smaller spotted catshark (Scyliorhinus canicula) | GCF_902713615.1 | evolution of pga |
cartilaginous fish | thorny skate (Amblyraja radiata) | GCF_010909765.2 | evolution of pga |
cartilaginous fish | smalltooth sawfish (Pristis pectinata) | GCF_009764475.1 | evolution of pga |
cartilaginous fish | little skate (Leucoraja erinacea) | GCF_028641065.1129 | evolution of pga |
