Table 3 Neuron segmentation software resources

AutoNeuriteJ

GAIN

MorphoNeuroNet

NeuriTES

Neurient

Neurite Analyzer

NeuriteIQ

NeuriteQuant

NeuriteSegmentation

NeuriteTracer

Neuron Image Analyzer

NeuronAnalyzer2D

NeuronCyto II

NeuronMetrics

NEMO

NeuronRead

NeuroTreeTracer

NeurphologyJ

SynD

WIS-Neuromath

Ref. ¹⁰⁹

Ref. ⁵⁷

Ref. ¹¹⁰

Ref. ⁸⁹

Ref.¹¹¹

Ref. ¹¹²

Ref. ⁹¹

Ref. ⁹³

Ref. ⁶³

Ref. ⁵²

Ref. ¹¹⁶

Ref. ⁶⁷

Ref. ¹¹⁷

Ref. ⁹⁴

Ref. ⁵⁸

Ref. ¹¹⁸

Ref. ¹¹⁹

Ref. ⁷¹

Ref. ¹²²

Ref. ⁹²

ImageJ/Fiji

Matlab-based GUI

ImageJ/Fiji

Matlab

Matlab

ImageJ/Fiji

GUI

ImageJ/Fiji

ImageJ/Fiji

ImageJ/Fiji

Matlab

ImageJ/Fiji

Matlab-based GUI

ImageJ/Fiji

Matlab-based GUI

ImageJ/Fiji

Matlab

ImageJ/Fiji

Matlab-based GUI

Matlab-based GUI

https://github.com/Grenoble-Institute-Neurosciences/AutoNeuriteJ

https://github.com/qutublab/GAIN

http://www.limid.ugent.be/downloads.html^a

https://github.com/Arianna1974/NeuriTES

https://github.com/jenmitch/neurient

https://github.com/AlexisHaas/Neurite_Analyzer

http://www.cbi-tmhs.org/NeuriteIQ/index.html^a

http://ewit.ccb.tu-dortmund.de/groups/CB/bastiaens/dehmelt/NeuriteQuant/

https://www.surgsci.uu.se/Forskning/forskningsomraden/Ortopedi/orto-lab-ikv/

https://fournierlab.mcgill.ca/styled-6/NeuriteTracer.html

https://github.com/kilho/NIA

https://mitobo.informatik.uni-halle.de/index.php/Applications/NeuronAnalyzer2D

https//sites.google.com/site/neuroncyto/^a

https://biii.eu/neuronmetrics^a

https://github.com/CentroEPiaggio/NEMO

Included as supplementary material in paper ¹²⁶

https://github.com/cihanbilge/AutomatedTreeStructureExtraction

https://hwangeric5.wixsite.com/erichwanglab/neurphologyj

software.incf.org/software/synd^a

https://biii.eu/wis-neuromath