Fig. 4: Dynamics of accessibility and CPAFPs between leaves and roots in rice.
From: Characterization of the DNA accessibility of chloroplast genomes in grasses
a Differences in FPD scores and accessibility of CPAFPs between young leaves and roots on genes with different functional classifications. The x-axis represents differences in FPD scores between young leaves and roots. The y-axis represents differences in accessibility of the flanking 50-bp from CPAFP centers (100-bp in total) between young leaves and roots. The 421 CPAFPs located in genic regions were used here. b Average accessibility of the CPAFPs located in the photosystem-related genes in roots and leaves. The accessibility of multiple CPAFPs located in the same photosystem genes was averaged. c RNA-seq coverages around tissue-differential CPAFPs. Thirty-two CPAFPs located in genic regions and with differential FPD scores (t-test, P value <0.05) between roots and young leaves were selected. Since the RNA-seq coverage of one CPAFP was 0 at each position, 31 CPAFPs were plotted finally.
