Table 1 The phased assembly of the Landrace pig
From: Haplotype-resolved assembly of a pig genome using single-sperm sequencing
Feature | Single sperm | Falcon-phase | Dipasm | |||
|---|---|---|---|---|---|---|
p0 | p1 | phased.0 | phased.1 | H1 | H2 | |
Number of scaffolds | 532 | 242 | 465 | 464 | 3555 | 3659 |
Contig N50 (Mb) | 16.58 | 17.40 | 29.56 | 29.65 | 25.46 | 24.64 |
Scaffold N50 (Mb) | 139.47 | 139.87 | 139.74 | 139.89 | 139.09 | 139.12 |
Longest Scaffold (Mb) | 277.04 | 285.09 | 279.69 | 279.78 | 275.92 | 275.89 |
Total scaffold length (Gb) | 2.59 | 2.61 | 2.52 | 2.52 | 2.55 | 2.55 |
GC rate (%) | 42.40 | 42.40 | 42.20 | 42.20 | 42.20 | 42.20 |
Illumina reads mapping rate (%) | 99.61 | 99.82 | 99.79 | 99.79 | 99.80 | 99.79 |
