Table 2 Structural comparison between the open, “C1”, “C2” and partially closed “pC” structures
State | PDB code | R.m.s deviation based on C-half superimposition (Å) | R.m.s deviation based on N-half superimposition (Å) | Opening angle (°) | ||
---|---|---|---|---|---|---|
N-half | α13 | C-half | α13 | |||
C1 | 8WXW | N.A.a | N.A. | N.A. | N.A. | 1.0 |
C1 | 3S5H | 0.67 | 0.76 | 0.68 | 0.53 | 2.3 |
C1 | 3S5I | 0.59 | 0.71 | 0.55 | 0.56 | 2.2 |
C1 | 3S5M | 0.55 | 0.71 | 0.55 | 0.50 | 2.3 |
C1 | 7DI7 | 0.50 | 0.28 | 0.48 | 0.27 | 2.2 |
C1 | 7DIA | 0.53 | 0.28 | 0.36 | 0.24 | 1.6 |
C1 | 7DIJ | 0.39 | 0.46 | 0.31 | 0.37 | 1.2 |
C1 | 7VPE | 0.37 | 0.37 | 0.30 | 0.26 | 1.6 |
C1 | 8HO4 | 0.64 | 0.44 | 0.67 | 0.36 | 2.1 |
C1 | 8HO5 | 0.49 | 0.27 | 0.28 | 0.24 | 2.0 |
C2 | 8WXZ | 1.60 | 0.55 | 1.76 | 0.53 | −3.4 |
C2 | 3S5K | 1.44 | 0.76 | 1.49 | 0.68 | N.A.b |
pC | 8WYX | 1.97 | 0.71 | 2.30 | 0.85 | 5.2 |
pC | 8WYT | 1.97 | 0.71 | 2.30 | 0.85 | 5.2 |
open | 8WYY | 19.0 | 4.29 | 17.3 | 1.53 | 32.5 |
open | 8WYU | 18.9 | 4.17 | 17.2 | 1.44 | 32.8 |