Fig. 4: Amino acid 93 modulates Ca2+ binding in the low-affinity Ca2+ -binding pocket and stabilizes the NA tetramer under Ca2+-depleted conditions. | Communications Biology

Fig. 4: Amino acid 93 modulates Ca2+ binding in the low-affinity Ca2+ -binding pocket and stabilizes the NA tetramer under Ca2+-depleted conditions.

From: Modulation of human-to-swine influenza a virus adaptation by the neuraminidase low-affinity calcium-binding pocket

Fig. 4

a NA protein model showing the interaction of G111, G112, and D113 with water molecules in the symmetry axis of the NA tetramer of hVIC/11 (right panel, green) and sOH/04 (left panel, blue). Water molecules are shown in red, and Ca2+ is shown in green. b sOH/04 (blue) and sOH/04-D113A (pink) NA sialidase activity at different Ca2+ concentrations. Values are presented as a percentage of the reaction velocity compared to 2 mM Ca2+ which was set at 100%, measured at 37 °C. Values represent the mean ± SD of three independent experiments. c sOH/04 and sOH/04-D113A thermostability assessed at 2 mM Ca2+ (solid line) or 0 mM Ca2+ (dashed line). T50 was determined by adjusting the data of three independent experiments to a dose-response variable slope nonlinear fit. d Left panel: Thermostability of hVIC/11 (yellow), hVIC/11-G93N (brown), and hVIC/11-A138S/G93N (green). Right panel: Thermostability of sOH/04 (blue) and sOH/04-N93G (orange). Thermostability profiles were determined at 2 mM Ca2+ (solid line) or 0 mM Ca2+ (dashed line). Values represent the mean ± SD of three independent experiments. e T50 values were determined by adjusting the data of three independent experiments to a dose-response variable slope nonlinear fit. p values were obtained by ordinary one-way ANOVA. f Left panel: NA sialidase activity of hVIC/11 (yellow), hVIC/11-G93N (brown), and hVIC/11-A138S/G93N (green) at different Ca2+ concentrations. Right panel: NA sialidase activity of sOH/04 (blue) and sOH/04-N93G (orange) at different Ca2+ concentrations. Values are expressed as the reaction velocity percentage compared to the velocity at 2 mM Ca2+ (100% activity), measured at 37 °C. Values represent the mean ± SD of three independent experiments. (g) NA activity at 0 mM Ca2+ of hVIC/11 and sOH/04 NA 93 mutants expressed as a percentage of the reaction velocity compared to 2 mM Ca2+ (100% NA activity), measured at 37 °C. Values are shown as the means of three independent experiments and p values were obtained by ordinary one-way ANOVA.

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